| E Fishin Sea | 22 | MS7779FG | 152422 | Ratajack, Robert | B1 |
| E.S.S. Pride | 145 | 1099267 | 150038 | Truex, Martin L. | B3 |
| E.S.S. Pursuit | 145 | 1132302 | 156680 | Truex, Martin L. | B3 |
| E2 | 19 | MS5384KH | 156259 | Ligenza, Theodore J. | IN |
| Eagle | 32 | MS0944G | 4622 | Carullo, Francis C. | CL |
| Eagle Eye | 60 | 669872 | 142615 | Eagle Eye Fishing Corp. | B1 |
| Eagle Eye Ii | 80 | 1022773 | 142616 | Eagle Eye Ii Corp. | B2 |
| Early Bird | 21 | 650263 | 145467 | Pimental Jr., Vincent | B1 |
| Early Times | 44 | 689215 | 4885 | Connors, Daniel E. | OL |
| East Wind | 35 | 964275 | 137312 | Doak, Michael D. | B1 |
| Eastern | 18 | MS0002WJ | 140524 | Jackson Iii, William J. | B1 |
| Eastern | 22 | MS0917RE | 131912 | Zielinski, Richard E. | B1 |
| Eastern Hunter | 98 | 982375 | 151016 | Eastern Hunter Llc | B2 |
| Eastern Shore | 24 | MS9565B | 139480 | Cabral, Jarrod J. | B1 |
| Eastern Skies | 22 | MS8632AA | 5371 | Church, Bryan E. | CL |
| Eastern Viking | 35 | 613381 | 105608 | Miller, Edward E. | B1 |
| Easterner | 19 | MS0052WC | 151354 | Cardani, Craig W. | SL |
| Eastwind | 35 | 964275 | 158219 | Connors, George P. | B1 |
| Eastwind | 22 | MS7581AS | 156949 | Kroeger, Robert H. | B1 |
| Easy Livin | 31 | 659738 | 7115 | Olson Jr., Albert W. | CL |
| Easy Money | 19 | MS6110AT | 157019 | Pereira, Eddie | B1 |
| Easy Money | 16 | MS3574HT | 65144 | Hemmila, Les A. | SR |
| Easy Rider | 24 | MS1716KW | 156962 | Mcginley, Edward A. | B1 |
| Easy Wind | 18 | MS8394AU | 158426 | Leonard, Scott W. | B1 |
| Eatin Out | 30 | RI4573U | 156056 | Petrucci, Alexander M. | B1 |
| Ec Go En | 23 | | 157225 | Whittemore, Warner D. | B1 |
| Echo | 21 | MS3135K | 139498 | Gregory, Michael K. | B1 |
| Edgartown | 84 | 601353 | 152156 | Nordic Seafoods Inc | ON |
| Edgewater 247 | 26 | MS0819EM | 155222 | Nugent, Matthew W. | B1 |
| Edith May | 20 | MS9839KB | 84732 | Peters, Stephen F. | CL |
| Edmund-Z | 38 | 1122116 | 761 | Zdanowicz, Joseph F. | CL |
| Edna Grace | 38 | 958988 | 5931 | Sullivan, Richard D. | CL |
| Edward & Joseph | 47 | 591810 | 142023 | Dodge, Charlie S. | ON |
| Edward L. Moore | 80 | 597172 | 153953 | Rafaella Llc | ON |
| Eel | 19 | MS8449AJ | 147664 | Conlan, John P. | B1 |
| Eelman | 18 | MS2002DL | 155134 | Lane, David J. | B1 |
| Efiy Wind | 20 | MS199ZC | 2017 | Clark, Mitchell R. | IN |
| Egret | 34 | MS0203DB | 4249 | Beane, Dwight W. | CL |
| Eider Duck Ii | 17 | MS4222ZF | 151924 | Stanton, Philip B. | B1 |
| Eileen K | 36 | 1111461 | 151701 | Parenteau, Michael H. | B1 |
| Eileen Marie | 88 | 670742 | 107916 | Eileen Marie Fishing Inc | ON |
| Eileen Rita | 74 | 632915 | 152703 | Bill And Eileen Inc | B2 |
| El Togus | 21 | MS3726AF | 158229 | Himber, Henry R. | B1 |
| El-Mo | 27 | 944540 | 110041 | Costa, Elizabeth M. | RR |
| El-Mo | 27 | MS5468ZE | 110042 | Costa, David J. | B1 |
| El-Mo | 28 | MS5468ZE | 113591 | Costa, Cheryl A. | RR |
| Elaine | 20 | MS1679AC | 117662 | Russell, Timothy P. | IN |
| Eliminator | 22 | MS2095HC | 2862 | Loring, Michael | B1 |
| Elizabeth | 75 | 1202139 | 156003 | Stommel, Matthew | ON |
| Elizabeth | 70 | 688168 | 153669 | Mclellan, Shawn C. | ON |
| Elizabeth & Niki | 88 | 612570 | 4386 | Elizabeth Niki Fishing Corp. | OL |
| Elizabeth A Ii | 15 | MS8505C | 7059 | Beaudoin, Richard R. | CL |
| Elizabeth Amber | 82 | 1093738 | 157645 | Fulcher, Gregory S. | B2 |
| Elizabeth Ann | 50 | 576586 | 155067 | Kendall, Peter T. | B1 |
| Elizabeth Ann | 30 | 960550 | 133229 | Baptista, Robert D. | B1 |
| Elizabeth Ann | 39 | 1110125 | 139818 | Confalone, Peter S. | B1 |
| Elizabeth Ann | 38 | 1110125 | 1676 | Boudreau, Jules M. | B1 |
| Elizabeth Ann | 39 | MS6740AU | 2041 | Patterson, Thomas C. | CL |
| Elizabeth Dawn | 28 | | 151537 | Cormier, Douglas L. | B1 |
| Elizabeth Lynn | 24 | CT4059AC | 146358 | Gonsalves, Ernie F. | B1 |
| Elizabeth Marie | 32 | 1141470 | 131885 | Green, Robert T. | B1 |
| Elizabeth Marie | 38 | 909502 | 131602 | Reis, Jorge | B1 |
| Elizabeth Vincent | 25 | MS4969BT | 7122 | Steriti, Edward | CL |
| Ella Briggs | 35 | 947396 | 3775 | Caldwell, Dylan H. | CL |
| Ellen Ann | 23 | MS2099AM | 146780 | Dedecko, Charles A. | B1 |
| Ellen Diane | 45 | 654949 | 153205 | Goethel, David T. | B1 |
| Ellen Gilberte | 32 | MS7920ZE | 78221 | Simmons, Lisa M. | B1 |
| Ellen M | 31 | 622371 | 1381 | Morrell, John F. | CL |
| Ellen Sea | 35 | MS0003KJ | 3051 | Jason, Kenneth P. | CL |
| Elli Mae | 25 | MS6119AU | 145645 | Peavey, Don A. | B1 |
| Ellie A Ii | 37 | MS0083EA | 1018 | Allen, Michael T. | CL |
| Ellie B (Fadden) | 42 | MS5916AR | 4429 | Fadden, Peter M. | CL |
| Ellie J | 18 | MS4251RJ | 2502 | Jastrzembski, Peter P. | CL |
| Ellie J | 30 | MS8035AS | 157602 | Murphy, Russell W. | B1 |
| Elmo | 24 | MS9613A | 133663 | Barnes Jr., Ronald R. | B1 |
| Eloise | 23 | MS7273DC | 148599 | Cenotti, Daniel L. | B1 |
| Eloise Vii | 25 | MS0325B | 2247 | Traniello, Anthony | CL |
| Elsie Iii | 32 | 1218153 | 56716 | Mcgillicuddy, Dennis J. | B1 |
| Elyse Rose | 26 | | 1760 | Callahan, Patrick | CL |
| Emaly B. | 15 | MS3028KN | 84952 | Bryson, Robert E. | IN |
| Emaly B. | 15 | MS3028KN | 138574 | Bryson, Lynda A. | IN |
| Emerald | 19 | MS1446AP | 20302 | Haskell, Francis P. | CL |
| Emia | 23 | MS4370KL | 105848 | Karakatsanis, Dimitrios | B1 |
| Emily Anne | 24 | | 131514 | Meads, James J. | B1 |
| Emily Kate | 35 | 1116195 | 5209 | Whelan, Steven C. | CL |
| Emily Kim | 24 | MS5230AS | 157675 | Parkington, Andrew J. | B1 |
| Emily Rose | 21 | MS2715JD | 152525 | Day, Jeffrey O. | SR |
| Emily Rose | 40 | 955822 | 598 | Haviland, John D. | CL |
| Emma Jack | 35 | 1054483 | 93745 | Harney, Michael W. | B1 |
| Emma Victoria | 21 | MS8994AF | 144985 | Terho, Chrsitopher M. | B1 |
| End Of The Line | 25 | MS3656K | 148632 | Teixeira, Thomas E. | B1 |
| Endanger Species | 49 | 943394 | 158150 | Skarimbas, Michael E. | B1 |
| Endeavor | 93 | 926487 | 142251 | Hansen Scalloping Inc | ON |
| Endeavor | 42 | 557094 | 6895 | Shea, Kevin R. | CL |
| Endeavor | 34 | 1170230 | 132667 | Sloane, Robert | CL |
| Endeavour | 141 | 933903 | 144203 | F/V Endeavour, Inc. | B3 |
| Endeavour Iii | 26 | MS5838AD | 144302 | Harrington, Alan | B1 |
| Endorfin | 28 | 1130042 | 155961 | Carpenter, James F. | B1 |
| Endorfin | 24 | MS4448AD | 156028 | Cuzner Jr., Richard D. | B1 |
| Endurance | 29 | 595369 | 145018 | Costa, Douglas J. | B1 |
| Endurance | 23 | MS1901AL | 155546 | Mandly, William R. | RR |
| Endurance | 36 | 1129114 | 85874 | Cullati, Francis J. | B1 |
| Endurance | 107 | 657549 | 142508 | Sai Fisheries, Inc. (Estudante) | ON |
| Endurance | 40 | MS2762HD | 5536 | Hurley, Patrick M. | CL |
| Endurance | 36 | 1135161 | 145755 | Savetsky, Eric | B1 |
| Enoch | 30 | MS7436AK | 145001 | Berggren Jr., Gerald R. | B1 |
| Enterprise | 117 | 664958 | 151402 | Lundmarr Trawlers Llc | B3 |
| Entrapment | 14 | MS1368KN | 147012 | Nantucket Sound Fish Weirs, Inc | B1 |
| Equinox | 44 | MS4029AY | 6992 | Dowd, Thomas H. | B1 |
| Erann 3 | 25 | MS9274FR | 136120 | Dewhurst, John G. | B1 |
| Erica Ann | 27 | MS5591KA | 3731 | Wonson Iii, Arthur S. | CL |
| Erica Lee | 42 | 646797 | 148945 | Yeomans, Robert J. | B1 |
| Erica Lee Ii | 48 | 1112203 | 139904 | Yeomans, Robert E. | B1 |
| Erica Rose | 32 | MS0037JM | 2444 | Mccarthy, Joseph F. | CL |
| Erin & Sarah | 45 | 984328 | 158444 | Speeches, Peter E. | B1 |
| Erin Lynn | 34 | 505634 | 1278 | Morey, Dennis P. | CL |
| Erin Sinead | 42 | MS8830AV | 5654 | Coyne Jr., Richard P. | CL |
| Esca | 24 | MS0023SA | 100488 | St Aubin, Judd L. | B1 |
| Escape | 21 | NH0691BG | 156065 | Eiras, Jeff | B1 |
| Escape | 35 | 1163557 | 150890 | Betti, Robert C. | RR |
| Ess Endeavor | 145 | 1166283 | 156573 | Truex, Martin L. | B3 |
| Esther'S Pride | 34 | MS2574ST | 2143 | Larsen, Stephen W. | CL |
| Esthers Pride | 42 | MS0016J | 9686 | Desimone, Michael | CL |
| Ethel | 24 | MS0562JC | 7323 | Carven Iii, Joseph F. | CL |
| Ethel A Ii | 20 | MS2824AG | 5574 | Alley Iii, Albion A. | CL |
| Evangeline | 35 | MS0724ER | 112922 | Rodegast, Eric S. | B1 |
| Evelyn C | 30 | MS4443HC | 1867 | Cook, Ernest E. | CL |
| Evelyn-Rose | 23 | NY5752DN | 145879 | Hammer, Frank W. | B1 |
| Evening Prayer | 60 | 538893 | 144769 | Maguire, Kevin J. | OL |
| Event Horizon | 21 | MS4605KS | 125982 | Campbell Ii, Gordon J. | B1 |
| Eveready | 46 | 695019 | 137454 | Hamilton, Thomas W. | B1 |
| Evergreen | 82 | 908904 | 55813 | Mar Li Mar, Inc. | OL |
| Exaggerator | 26 | MS5659AL | 7461 | Marcella, Douglas S. | CL |
| Excalibur | 71 | 607406 | 107745 | Hovanesian, Joel | ON |
| Excalibur | 25 | MS4234AF | 4088 | Pacheco, Christopher H. | CL |
| Excalibur | 35 | 929220 | 136967 | Burhoe, Jared T. | B1 |
| Excavator | 28 | 669598 | 407 | Fauteux, Henry R. | CL |
| Excavator Ii | 37 | 638405 | 51571 | Leahy, Edward A. | B1 |
| Excellent Adventure | 28 | 958041 | 156603 | Savoia, Mario V. | B1 |
| Expectation | 70 | 602888 | 156412 | Constellation Fisheries, Inc. | B2 |
| Explorer | 89 | 618325 | 144152 | Vinjerud Ii, Lars | B2 |
| Explorer Ii | 46 | 621654 | 84829 | Explorer Ii Corp. | OL |
| Explorer Iii | 19 | MS2457KP | 155840 | Akerley, Leif M. | SL |
| Explorer Iii | 19 | MS2457KP | 155861 | Akerley, E Bonnie. | B1 |
| Extras | 28 | MS2796SB | 157964 | Bullock, Stephen B. | B1 |
| Extreme | 35 | MS8498B | 1368 | Blackman, Jeffrey R. | CL |
| Ez Escape | 21 | MS3507BU | 155957 | Zussy, Eugene A. | B1 |
| Ez Snoozer | 20 | MS8733FB | 57844 | Brehaut, Kenneth P. | B1 |
| Ezyduzit | 32 | MS1703KJ | 94192 | Chaprales, William C. | B1 |